- Data analysis and visualization for companies and academic partners
- Development and application of deep learning models
- Business dashboard development
- Support for R data analysis pipelines
Alexandre Gouy
Data Scientist
Bioinformatician
R Expert
Alexandre Gouy
Data Scientist
Bioinformatician
R Expert
Resume
Experience
2019 - Present
Freelance Data Scientist
2015 - 2019
PhD Candidate
University of Bern
- Development of statistical methods and software for the analysis of large-scale genomic data
- R/Bioconductor package development
- Shiny web application development
- Deep learning (Python/Keras/Tensorflow)
- Scientific writing
- Teaching (statistics and genomics)
2009 - 2010
Computer Science Tutor
University of Limoges
- 350 hours of computer science teaching
EDUCATION
2019
PhD
with highest honors
University of Bern (Switzerland)
2015
Master of Science
with highest honors
University of Montpellier (France)
2013
Bachelor of Science
with high honors
University of Limoges (France)
My Skills
Knowledge
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Data visualisation
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Data analysis
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Machine learning
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Bioinformatics - genomics
-
Scientific writing
-
Mentoring
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Typography and print design
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Tableau - BI tools
Coding
-
R
-
d3.js
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Python
-
C#
-
C++
-
Javascript
Languages
-
French
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English
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Spanish
-
German
Scientific publications
- Armstrong E., Khan A., Taylor R., Gouy A., Greenbaum G., Thiéry A., et al. (submitted) Recent evolutionary history of tigers highlights contrasting roles of genetic drift and selection.
- Gouy A., Excoffier L. (2020) Polygenic selection and co-introgression of archaic variants contributed to modern humans’ adaptation to pathogens. Molecular Biology and Evolution, msz306.
- Gouy A. & Cruz-Dávalos D.I. (2020), Nothing stands still in the streams of life. In The Beauty of Theoretical Biology, Springer.
- Peischl S., Dupanloup I., Foucal A., Jomphe M., Bruat V., Grenier J.-C., Gouy A., Gilbert K.J., Gbeha E., Bosshard L., Hip-Ki E., Agbessi M., Hodgkinson A., Vézina H., Awadalla P., Excoffier L. (2018). Relaxed selection during a recent human expansion. Genetics 208(2): 763-777
- Gouy A., Daub J.T. & Excoffier L. (2017). Detecting gene subnetworks under selection in biological pathways. Nucleic Acids Research 45(16): e149
- Gouy A. & Zieger M. (2017). STRAF—A convenient online tool for STR data evaluation in forensic genetics. Forensic Science International: Genetics 30: 148-151
- Rousset F., Gouy A., Martinez‐Almoyna C., & Courtiol A. (2017). The summary likelihood method and its implementation in the Infusion package. Molecular Ecology Resources 17: 110-119